Richard Smith-Unna

Professional Title:  PhD Student; Swanky dev

 Github

Biography

PhD student in computational plant biology (trying to feed the world by making plants better at being food) and maker of delicious software at ContentMine

Projects


bettersam

1 Ruby

Extended SAM file parsing in ruby

Last Updated: June 30, 2014

A wrapper for BLAST+ to make it an easy dependency for gems

Last Updated: April 08, 2014

my personal site

Last Updated: July 12, 2014

Differential expression experiment workflows

Last Updated: April 02, 2014

iOS-DiffMatchPatch

1 Objective-C

DiffMatchPatch iOS universal frameworks

Last Updated: April 25, 2014

nothing to see here

Last Updated: June 19, 2014

The Julia package for analysis of evolution and phylogeny

Last Updated: July 03, 2014

pubpeer-pubmed

JavaScript

Chrome plugin to integrate PubPeer comments with PubMed articles

Last Updated: March 08, 2014

Multiple sequence annotation

Last Updated: May 14, 2014

solvers

JavaScript

Solvers - improve our world

Last Updated: April 12, 2014

Course materials for the genome annotation part of the TGAC SeqAhead course 2014

Last Updated: June 13, 2014

better-blast

2 10 C++

An evolving prototype experimenting with some ways to improve on BLAST. If it works, we'll engineer an industrial-strength suite.

Last Updated: May 08, 2014

biopsy

2 8 CSS

Biopsy - the Bioinformatic Optimisation System

Last Updated: June 05, 2014

chain

4 Ruby

bioinformatic pipelines with minimal effort

Last Updated: October 20, 2013

A collection of data structures in Ruby for my data structures challenge

Last Updated: December 06, 2013

facs

C

Fast and Accurate Classification of Sequences using Bloom filters

Last Updated: January 17, 2014

jekyll-midnight

JavaScript

Github Pages midnight theme ported to Jekyll

Last Updated: December 19, 2013

nv

2 Objective-C

Always-on-top version of nvAlt

Last Updated: January 08, 2013

Slides for my talk at OpenResearchCambridge 2014

Last Updated: January 18, 2014

remark

JavaScript

A simple, in-browser, markdown-driven slideshow tool.

Last Updated: February 24, 2014

Intuitive local web frontend for the BLAST bioinformatics tool

Last Updated: November 21, 2013

Position windows on a screen

Last Updated: November 06, 2013

assemblotron

2 7 Ruby

Automated optimisation of de-novo transcriptome assembly

Last Updated: June 13, 2014

Bio.jl

Julia

Bioinformatics and Computational Biology Infrastructure for Julia

Last Updated: April 20, 2014

crb-blast

Ruby

Condition Reciprocal Best Blast

Last Updated: June 09, 2014

EBSeq

1 R

clone of EBSeq from bioconductor - beware experimental features

Last Updated: April 04, 2014

This project has no description

Last Updated: November 19, 2013

julia

Julia

The Julia Language: A fresh approach to technical computing.

Last Updated: October 21, 2013

miscellaneous tools for analysis of RNA-seq data

Last Updated: November 08, 2013

snap

C++

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

Last Updated: November 25, 2013

An IJulia Frontend for Sublime Text 3

Last Updated: February 10, 2014

transrate

3 8 Ruby

Understand your transcriptome assembly

Last Updated: July 21, 2014

statsample

Ruby

A suite for basic and advanced statistics on Ruby.

Last Updated: December 22, 2013

Paper for Assemblotron

Last Updated: February 02, 2014

Tools for bioinformatics

Last Updated: February 20, 2014

This project has no description

Last Updated: February 26, 2014

data

JavaScript

Repository for crowd-sourced data from genomics analysis of the UK ash dieback (Chalara fraxinea) outbreak 2012

Last Updated: April 19, 2013

eXpress

C++

Streaming fragment assignment and quantification for high-throughput sequencing.

Last Updated: April 03, 2014

Rapid and robust analysis of RNA-Seq experiments.

Last Updated: March 23, 2014

NoCaSS

JavaScript

Norwich-Cambridge Student Symposium website

Last Updated: April 22, 2014

PhD

1

Reference library, documents, data and code used during my PhD (Plant Sciences)

Last Updated: March 01, 2014

This project has no description

Last Updated: October 17, 2013

scraperJSON and ContentMine stack demo paper for WOSP 2014

Last Updated: July 20, 2014

styles

2

Repository of CSL citation styles.

Last Updated: October 07, 2013

timetrap

Ruby

Simple command line timetracker

Last Updated: October 19, 2013

A Jekyll Bootstrap theme based on Leap-day

Last Updated: July 07, 2014

AMI-diagrams demo paper for WOSP 2014

Last Updated: July 20, 2014

bindeps

2 Ruby

Binary dependency management for Ruby

Last Updated: July 02, 2014

TODO: one-line summary of your gem

Last Updated: February 02, 2014

Porting some of bootstrap's plugins over to d3

Last Updated: August 06, 2013

fig1

1 R

This project has no description

Last Updated: February 26, 2014

meteor-pagedown-bootstrap

2 1 JavaScript

Meteor smart package for pagedown-bootstrap

Last Updated: April 17, 2014

rb-libsvm

C++

Ruby language bindings for LIBSVM

Last Updated: April 16, 2013

rubocop

Ruby

A robust Ruby code analyzer, based on the community Ruby style guide.

Last Updated: November 07, 2013

Solvers.io project to predict gene expression from motif combinations in promoters

Last Updated: March 19, 2014

Course materials for the transcriptome assembly optimisation part of the TGAC SeqAhead course 2014

Last Updated: June 08, 2014

Paper for transrate

Last Updated: May 28, 2014

YRDropdownView

Objective-C

YRDropdownView is a view library for displaying stylish alerts, warnings, and errors.

Last Updated: January 12, 2013

Skills

Objective-C


CSS


Ruby


JavaScript


Julia


R