PhD student in computational plant biology (trying to feed the world by making plants better at being food) and maker of delicious software at ContentMine
A wrapper for BLAST+ to make it an easy dependency for gems
DiffMatchPatch iOS universal frameworks
The Julia package for analysis of evolution and phylogeny
Chrome plugin to integrate PubPeer comments with PubMed articles
Course materials for the genome annotation part of the TGAC SeqAhead course 2014
An evolving prototype experimenting with some ways to improve on BLAST. If it works, we'll engineer an industrial-strength suite.
A collection of data structures in Ruby for my data structures challenge
Fast and Accurate Classification of Sequences using Bloom filters
Github Pages midnight theme ported to Jekyll
Slides for my talk at OpenResearchCambridge 2014
A simple, in-browser, markdown-driven slideshow tool.
Intuitive local web frontend for the BLAST bioinformatics tool
Automated optimisation of de-novo transcriptome assembly
Bioinformatics and Computational Biology Infrastructure for Julia
clone of EBSeq from bioconductor - beware experimental features
The Julia Language: A fresh approach to technical computing.
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
Repository for crowd-sourced data from genomics analysis of the UK ash dieback (Chalara fraxinea) outbreak 2012
Streaming fragment assignment and quantification for high-throughput sequencing.
Reference library, documents, data and code used during my PhD (Plant Sciences)
scraperJSON and ContentMine stack demo paper for WOSP 2014
Porting some of bootstrap's plugins over to d3
Meteor smart package for pagedown-bootstrap
A robust Ruby code analyzer, based on the community Ruby style guide.
Solvers.io project to predict gene expression from motif combinations in promoters
Course materials for the transcriptome assembly optimisation part of the TGAC SeqAhead course 2014